rs30204828 SNP Detail

Summary

• ID
  rs30204828
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33199084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATT CCAGAGTTAA CACTTTCTAA
  R
  TCTGTATTTT ATCTTTGCCG CCCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45404543	mCV24938947	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss134754578	ENSMUSSNP2806196	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320699053	CHEV_3_33043857	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30204828					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33199084 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13064	CpG island 13064	1308 bp distal
Pex5l	peroxisomal biogenesis factor 5-like	1688 bp upstream
Rr575054	regulatory region 575054	1864 bp distal
Rr575055	regulatory region 575055	1363 bp distal
Tssr32953	transcription start site region 32953	1935 bp upstream
Tssr32954	transcription start site region 32954	1911 bp upstream
Tssr32955	transcription start site region 32955	1849 bp upstream
Tssr32956	transcription start site region 32956	1776 bp upstream
Tssr32957	transcription start site region 32957	1749 bp upstream
Tssr32958	transcription start site region 32958	1715 bp upstream
Tssr32959	transcription start site region 32959	1669 bp upstream
Tssr32960	transcription start site region 32960	1643 bp upstream
Tssr32961	transcription start site region 32961	1623 bp upstream