rs30205553 SNP Detail

Summary

• ID
  rs30205553
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:117161976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACCCGAATT TTCACTTGCA TCCCATTTCA CAGACTTCTG
  AGAACTTGGG AGAAAATGTT AAGGTTATAG TGTTTGAGAG AATCTGATGA GAGAAGATTA
  M
  AACACCTTGT CCCTCCTGGG GTCCTGTTTC TTGCATGGCC AGCAGCCATT GTTTTATCTT
  CACATGCCCT AAGCCTAGTG ATTTAAGAAT CCAGTGTTT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39161784	mCV25043670	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss324842592	CHEV_14_117323786	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30205553					SNP	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:117161976 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6842	CpG island 6842	605 bp proximal
Gpc6	glypican 6	751 bp upstream
Rr497535	regulatory region 497535	376 bp proximal
Rr497536	regulatory region 497536	1383 bp proximal
Rr497537	regulatory region 497537	1574 bp proximal
Tssr127141	transcription start site region 127141	641 bp upstream
Tssr127142	transcription start site region 127142	695 bp upstream
Tssr127143	transcription start site region 127143	727 bp upstream
Tssr127144	transcription start site region 127144	815 bp upstream
Tssr127145	transcription start site region 127145	941 bp upstream
Tssr127146	transcription start site region 127146	952 bp upstream
Tssr127147	transcription start site region 127147	981 bp upstream
Tssr127148	transcription start site region 127148	994 bp upstream
Tssr127149	transcription start site region 127149	1208 bp upstream
Tssr127150	transcription start site region 127150	1239 bp upstream