rs30205621 SNP Detail

Summary

• ID
  rs30205621
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60744939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGCATTA GAGAGCCGGA
  GGCAGGAGGA GCAGAAGTCC ATGGTCATGA TTGGTTGGAT ATCTAGCAGG CTTGAGGCCT
  GCTGGGCTAC AGGAGACTCA GCACAGTGGT GTAGACTCTT AATCTCAGGA GACAGAGACA
  GAGACAGAGA CAGAGACAGA GACAGAGACA GAGACAGGGG GGCTCTCTAT GAGTTTCAGG
  R
  CAGTGAAGAC TACGGAGTGA GACCTGGTGT CAAAAAGTTG ATCAATTATT AAGAAAAAGA
  AGGGGCTGGA AAAAGTGTCT CAGAGGTTTA CAGGACCTGC TGCTTTTGCA GAAGACCCGG
  ACTTGGTTCC CAGCACCCAC GTGGTGGCTA TCAACCACCT GTAACTCCGA TCCCTGGAGA
  CCTAGCACTC TCTTCTGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39657539	mCV24046422	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss147248066	ENSMUSSNP5252521	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss325640178	CHEV_18_60771521	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30205621					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60744939 () rs orientation: forward

Symbol	Name	Function Class
Rr538593	regulatory region 538593	1773 bp distal
Rr538594	regulatory region 538594	1526 bp distal
Rr538595	regulatory region 538595	1374 bp proximal
Synpo	synaptopodin	within coordinates
Tssr153456	transcription start site region 153456	1799 bp upstream
Tssr153457	transcription start site region 153457	1755 bp upstream
Tssr153458	transcription start site region 153458	1554 bp downstream
Tssr153459	transcription start site region 153459	1634 bp downstream
Tssr153460	transcription start site region 153460	1663 bp downstream