rs30207309 SNP Detail

Summary

• ID
  rs30207309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:32361927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTC AGCATCTGTC AACTGTTAAT
  Y
  CCATCCATTC CATCCTTCCT GTGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45903900	mCV23047937	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C		T
ss51581829	NES14855002	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	T	T		C	T	T	C		T
ss133099657	ENSMUSSNP1417124	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss321777892	CHEV_6_32334992	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30207309					SNP	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51581829	NES14855002	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32361927 () rs orientation: forward

Symbol	Name	Function Class
Plxna4	plexin A4	Intron
Rr628102	regulatory region 628102	55 bp proximal
Rr628103	regulatory region 628103	1768 bp proximal