rs30207625 SNP Detail

Summary

• ID
  rs30207625
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95616997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAAGGATT AGGTGTTTTC TATCTAAGGT AATGGCTTTG
  GGGGTTGGAG TGATTGTTAG TCCCAAGTAA GTGACCTGAG GTGTGGACAA TTAGACATTA
  S
  ATGGTAAGAC TCTGAAGACC TAGCTTGACA AGAAATTCAT AAGAGCAGAG GTGGTAGTTT
  GACTAATTTG TAGGAGAAGA GAATGTCATC TACATACTG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45406031	mCV22766738	ABI	CRAMUS_MOUSE	f	SNP		G	G					C		G
ss46776392	NES10746871	PERLEGEN	MM_PANEL2	f	SNP	G		G	C	G	G	G		G	G	C	C	G	C	G	G
ss135512745	ENSMUSSNP1368473	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30207625					SNP	G	G	G	C	G	G	G	C	G	G	C	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46776392	NES10746871	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95616997 () rs orientation: forward

Symbol	Name	Function Class
Rr367486	regulatory region 367486	1987 bp downstream
Rr581025	regulatory region 581025	1813 bp distal
Tssr34521	transcription start site region 34521	1010 bp downstream