rs30208924 SNP Detail

Summary

• ID
  rs30208924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141154552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATGAAAC ACATGATCTG
  GAAGGACCCA CATAGACTGC CTCAAAGCAG GTTGTAAATA AGTCTTTTCT GTAGTGTATG
  TAGTTTAGCC AATCATGGCA ACTGTGTTCA ATATGCAAAA CCCACCTGAT TAAAACACTG
  GCCAAACAAA CAAAAATGAA ATACTTATCC TTTCCTTTCA AGGACAAAAT TACAGGGATT
  Y
  CATGAAATTA CCTCCTCCTG GGGTGTAAAT GTCAACTACC CTGTCCAGAG ATCTAAGGAA
  CTTTTTGACA CTGGCATCTT CTAGAAATCA GACAACTCCT TGGAATTTGT ATAGATTTAA
  ATATACAGAC AGACCTTCCA TGGAGTAAAA CTGAATCTTA GATTTAGCAT GTGCAAGAAC
  CACTACCCAA ATGTATATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss45404783	mCV24946282	ABI	CRAMUS_MOUSE	f	SNP		T	C	C		C
ss61092830	NES16592628	PERLEGEN	MM_PANEL2	f	SNP	T				C			T	T
ss136004454	ENSMUSSNP5067739	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C			C
ss320992231	CHEV_3_141111755	CHEVERUD	SCREENING_POP	f	SNP							T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs30208924					SNP	T	T	C	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092830	NES16592628	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141154552 () rs orientation: forward

Symbol	Name	Function Class
Gm66152	predicted gene, 66152	within coordinates
Tssr32030	transcription start site region 32030	404 bp upstream