rs30209223 SNP Detail

Summary

• ID
  rs30209223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128072599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTGTCCC CAACATCCAG
  CACACAGAGC ATCTGAGATG CTGGTTTTCA CCCTAGGCAG TCAGTCCCCT CTCCCACTTT
  GTCATCACCA CTGGGAAGTG GGGACAGCAC AGGCTTAGCC AAGTTCTGCA CTGCGATCTG
  CAAGTGACCC TCCCTATTAC TTGCTATTGG AGTGCCTCCA TTTCTTTCTC TGAAGAAATC
  Y
  AAGTCACACC ATGATGGTCG GGGGGGGGGG GGGGTAATAA AATGAGTGTG CCTGAAAGCT
  CCTGGCACAA AACATGGCTC CATGAACCTT CTGTCTCTTT CTTCCCCCAA GGTAGAGGAC
  AATTACAAAG ACTGAATGGA GAACTTCAGC GGGTTTATGG AATGTGGGCA GTGCAAGCAG
  GGAATCAAGG TCAGGAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45903825	mCV22305983	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss321943868	CHEV_6_128045654	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30209223					SNP	T	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128072599 () rs orientation: forward

Symbol	Name	Function Class
Gm55163	predicted gene, 55163	610 bp upstream
Rr639181	regulatory region 639181	205 bp distal
Rr639182	regulatory region 639182	225 bp distal
Tspan9	tetraspanin 9	within coordinates