rs30209523 SNP Detail

Summary

• ID
  rs30209523
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77544615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGT TAGTTGACAG AAAATAAATA
  K
  AGATTTTTGT ACTAAATGTG CACAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46384195	mCV25224094	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
ss136659843	ENSMUSSNP2466863	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss323013588	CHEV_9_77485140	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30209523					SNP	G	G	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77544615 () rs orientation: forward

Symbol	Name	Function Class
Gm68532	predicted gene, 68532	506 bp upstream
Klhl31	kelch-like 31	within coordinates
Rr683389	regulatory region 683389	823 bp distal
Rr683390	regulatory region 683390	517 bp distal
Rr683391	regulatory region 683391	330 bp distal
Rr683392	regulatory region 683392	81 bp proximal
Tssr86194	transcription start site region 86194	853 bp downstream
Tssr86195	transcription start site region 86195	805 bp downstream
Tssr86196	transcription start site region 86196	786 bp downstream
Tssr86197	transcription start site region 86197	723 bp downstream
Tssr86198	transcription start site region 86198	713 bp downstream
Tssr86199	transcription start site region 86199	698 bp downstream
Tssr86200	transcription start site region 86200	622 bp downstream
Tssr86201	transcription start site region 86201	601 bp downstream