rs30209581 SNP Detail

Summary

• ID
  rs30209581
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10611604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATACACG TGTACATATT
  CTTACAAAGT AGACCTAAGT AAGGCCAGTA TTCTGCTCTG TTAGCTTTAC ATACGAGCAT
  AAAAATCCCT GTCACACCAT TTGAAATCAT AGGTATTTAT TGTTGGTAAA GAAGTTGTTT
  GAAGCCAGGA ATTATATTAG TGAACCAGCC GACTTCCATG TTAGACTTGA AAGAGCCAAA
  R
  AACCATCTTA TAGTAAAGAC AAGCTAGACT CACTCCTCTT TATGATTGAT TAAGCCTGTT
  TCTCAAGGAT TGCGCTATGC CCCACCTGTA GCCTTAACTA CAAATGGTTC AGTACTGCCT
  GTGCCAGGGA AAGGCAACCA CATCCTTATT TTGCAAAGTT GTTCATAAGC ATCTTGCAAG
  CCTACCGTTG TTTCATAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss39658727	mCV27569844	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss146607094	ENSMUSSNP343453	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss325524300	CHEV_18_10611602	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs30209581					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10611604 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	956 bp distal
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	1252 bp upstream
Rr533778	regulatory region 533778	1506 bp distal
Rr533779	regulatory region 533779	1828 bp distal
Rr533780	regulatory region 533780	762 bp distal
Rr533781	regulatory region 533781	1468 bp distal
Rr533782	regulatory region 533782	1162 bp distal
Tssr152429	transcription start site region 152429	1488 bp upstream
Tssr152430	transcription start site region 152430	1460 bp upstream
Tssr152431	transcription start site region 152431	1316 bp upstream
Tssr152432	transcription start site region 152432	1292 bp upstream
Tssr152433	transcription start site region 152433	1241 bp upstream