rs30211539 SNP Detail

Summary

• ID
  rs30211539
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89067493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCC GGGGCACAGG GGGCGTGTGC
  W
  GGCGACAGAC GTGCGAGAGC TGCGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45406271	mCV24135056	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss135473786	ENSMUSSNP6930040	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs30211539					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89067493 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13404	CpG island 13404			within coordinates
Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 3			mRNA-UTR
				Noncoding-Transcript-Variant
Rr579960	regulatory region 579960			within coordinates
Rr579961	regulatory region 579961			19 bp proximal
Tssr34093	transcription start site region 34093			within coordinates