rs30212589 SNP Detail

Summary

• ID
  rs30212589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:98763967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGGAGTTC TGTCTTGGGA AGCTATAATA TCAATCCGAG
  ATTACAAACT GTGAAGGCAT TGGGGAAATC TGAGCAAGGA ACATGCTAAC AAGCTTGTGT
  Y
  CTATGAACTT CCAGTGAGGA GGATTCAGAA GAGGGAGACA CAAAGATGGA CATTCAGCCC
  TGCCCCTGAT AGGTCTTGAC ACTTGGGTCT GTGCTGAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45407255	mCV24575135	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30212589					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:98763967 () rs orientation: forward

Symbol	Name	Function Class
Gm65690	predicted gene, 65690	within coordinates
Hsd3b1	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	within coordinates
Rr1170	regulatory region 1170	1021 bp distal
Tssr979	transcription start site region 979	1263 bp downstream
Tssr980	transcription start site region 980	1650 bp downstream
Tssr981	transcription start site region 981	1676 bp downstream
Tssr34711	transcription start site region 34711	570 bp upstream
Tssr34712	transcription start site region 34712	1269 bp downstream
Tssr34713	transcription start site region 34713	1316 bp downstream
Tssr34714	transcription start site region 34714	1355 bp downstream
Tssr34715	transcription start site region 34715	1449 bp downstream
Tssr34716	transcription start site region 34716	1472 bp downstream
Tssr34717	transcription start site region 34717	1532 bp downstream
Tssr34718	transcription start site region 34718	1592 bp downstream
Tssr34719	transcription start site region 34719	1638 bp downstream
Tssr34720	transcription start site region 34720	1659 bp downstream