rs30213153 SNP Detail

Summary

• ID
  rs30213153
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136803753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGG AGTGGAGATA ATGAATCTGG
  R
  TTAAAGACAA ATACATGCTC TTTAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45904369	mCV24050777	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					G	A
ss51454441	NES13991534	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	A	A		A	A	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30213153					SNP	A	A	A	A	G	A	A	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51454441	NES13991534	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136803753 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	871 bp upstream
Cpgi18110	CpG island 18110	814 bp proximal
Rr380176	regulatory region 380176	269 bp upstream
Rr640072	regulatory region 640072	528 bp proximal
Rr640073	regulatory region 640073	1468 bp proximal
Tssr2044	transcription start site region 2044	1702 bp upstream
Tssr59337	transcription start site region 59337	990 bp upstream
Tssr59338	transcription start site region 59338	1006 bp upstream
Tssr59339	transcription start site region 59339	1044 bp upstream
Tssr59340	transcription start site region 59340	1075 bp upstream
Tssr59341	transcription start site region 59341	1659 bp upstream
Tssr63834	transcription start site region 63834	722 bp upstream
Tssr63835	transcription start site region 63835	659 bp upstream
Tssr63836	transcription start site region 63836	959 bp downstream
Tssr63837	transcription start site region 63837	992 bp downstream
Tssr63838	transcription start site region 63838	1011 bp downstream
Tssr63839	transcription start site region 63839	1065 bp downstream
Tssr63840	transcription start site region 63840	1296 bp downstream
Tssr63841	transcription start site region 63841	1369 bp downstream
Tssr63842	transcription start site region 63842	1431 bp downstream
Wbp11	WW domain binding protein 11	within coordinates