rs30213566 SNP Detail

Summary

• ID
  rs30213566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22038558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGG CTCTCCGCCC TTCCCGGTCA
  Y
  GTGACACCGA AGGACGCTCA GATTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss39162775	mCV22932326	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss324567177	CHEV_14_22807712	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs30213566					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22038558 () rs orientation: forward

Symbol	Name	Function Class
A330001L22Rik	RIKEN cDNA A330001L22 gene	1131 bp upstream
Cpgi6225	CpG island 6225	1804 bp distal
Cpgi6226	CpG island 6226	within coordinates
Cpgi6227	CpG island 6227	429 bp proximal
Gm62264	predicted gene, 62264	1379 bp upstream
Rr488634	regulatory region 488634	1024 bp proximal
Rr488635	regulatory region 488635	1101 bp proximal
Tssr124462	transcription start site region 124462	1442 bp upstream
Tssr127699	transcription start site region 127699	981 bp upstream
Tssr127700	transcription start site region 127700	917 bp upstream
Tssr127701	transcription start site region 127701	608 bp upstream
Tssr127702	transcription start site region 127702	593 bp upstream
Tssr127703	transcription start site region 127703	481 bp upstream
Tssr127704	transcription start site region 127704	54 bp upstream
Tssr127705	transcription start site region 127705	985 bp downstream
Zfp503	zinc finger protein 503	within coordinates