rs30213983 SNP Detail

Summary

• ID
  rs30213983
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:65510499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCAGGTT TATACTACAA
  ATACTTTTAT CATCTGAGCC CTCTCTCTAC CCCTTAACTT TCTTTTAACA AACTCCTTTT
  ACTACTGAGT CATTAATGCC TGATCATCAA CTCTAAGTGA TCTATTCTCC AATCCAGGGA
  TAGCTCCCAC GTTTGGCCCT ATATCCTCTA GATATCTCTT GCTTCCATTT TAAGTTGTCC
  R
  TTTGCTAGCA CGCTTGAGGG TGGTGGCAGT GGGAGACAAA TTTAACCAGC ATGAAAATGT
  TGGTTAAAAG TAGACTGTAG AGCTCGATTT TATGAAGTGA AGTTATTCAA GCCATTCCTA
  GAGGGCCACA GCAAGTTAAA GAGTTAAAGT ATCTATCTGA AAATTAACCA GTTAAAGTAT
  CTGAAAATTA ACTAGTTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39659751	mCV24014768	ABI	CRAMUS_MOUSE	f	SNP	A					G		G
ss50444154	NES13447298	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	A		A	G	G	G		A	G	A	A		G
ss147311823	ENSMUSSNP2822509	ENSEMBL	ENSEMBL_Sanger	f	SNP	A							G
ss325657145	CHEV_18_65537082	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30213983					SNP	A	G	A	G	A	G	A	G	G	G	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50444154	NES13447298	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65510499 () rs orientation: forward

Symbol	Name	Function Class
Alpk2	alpha-kinase 2	within coordinates
Tssr151596	transcription start site region 151596	1718 bp downstream