rs30216498 SNP Detail

Summary

• ID
  rs30216498
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94391202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAA CAAAGAGTGA TACTGTGGGT
  R
  TCAGGGAGAG GATAGAGCTC TGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45408552	mCV22282217	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss320840247	CHEV_3_94287817	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30216498					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94391202 () rs orientation: forward

Symbol	Name	Function Class
Celf3	CUGBP, Elav-like family member 3	within coordinates
Cpgi13484	CpG island 13484	49 bp proximal
D3Umi4	DNA segment, Chr 3, University of Michigan 4	1179 bp proximal
Gm65215	predicted gene, 65215	within coordinates
Gm65218	predicted gene, 65218	535 bp downstream
Rr580638	regulatory region 580638	780 bp distal
Rr580639	regulatory region 580639	within coordinates
Rr580640	regulatory region 580640	314 bp proximal
Rr580641	regulatory region 580641	1067 bp proximal
Tssr30454	transcription start site region 30454	429 bp upstream
Tssr30455	transcription start site region 30455	443 bp upstream
Tssr30456	transcription start site region 30456	474 bp upstream
Tssr34391	transcription start site region 34391	320 bp downstream