rs30216831 SNP Detail

Summary

• ID
  rs30216831
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37725962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTT GGAGCTCATT CTGTAGCTCA
  W
  ATTGGTTCCA AGCTCATGAT CTTTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
ss45408457	mCV25406318	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss134810625	ENSMUSSNP5079078	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T			A
ss320711632	CHEV_3_37570735	CHEVERUD	SCREENING_POP	f	SNP				T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
rs30216831					SNP	T	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37725962 () rs orientation: forward

Symbol	Name	Function Class
Rr374835	regulatory region 374835	907 bp upstream
Rr406863	regulatory region 406863	87 bp proximal
Rr575537	regulatory region 575537	416 bp proximal
Rr575538	regulatory region 575538	1803 bp proximal
Tssr33054	transcription start site region 33054	606 bp downstream