rs30216995 SNP Detail

Summary

• ID
  rs30216995
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86456600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGTACACA GAGGCTGCCA
  TTTTCTGGGT CCTGGTGCAC ATATAACTCT TTTAGGTGAG AAGATACAGG TTTATTTATA
  AGAACTCTGG ATCTGCAACT TGGAAATTGT ATCCTATTAG CTTCTACAAC TTGAAGAGTG
  TTGTCGGGTT TAATGTATCC ATGAGCAATG TTAGGTTGTG GCATTACTTT ATGGCTGCCA
  Y
  TATCTGCCTG AATATCTTCT TCACCCCTTC CTCATTCAGG AGGCTATTTT CCATTATCAG
  GTCAAACATG TTTCCTCCTA GAGTACACTC TACTACTAGA TGGACCTGCT TGGAAGTTAC
  TCTAGAACCT GGAAGAAGCT GATGTTAGGA TGGTGTAGTG AACAAGGTCA AGGTTGTGAT
  GGACCCTCTT ATGCTTGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss47924935	NES12039540	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30216995					SNP	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47924935	NES12039540	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86456600 () rs orientation: forward

Symbol	Name	Function Class
Gm48473	predicted gene, 48473	within coordinates
Gm48474	predicted gene, 48474	239 bp downstream
Gm48475	predicted gene, 48475	1520 bp downstream