rs30216997 SNP Detail

Summary

• ID
  rs30216997
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86456715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTCTTCAC CCCTTCCTCA TTCAGGAGGC TATTTTCCAT
  TATCAGGTCA AACATGTTTC CTCCTAGAGT ACACTCTACT ACTAGATGGA CCTGCTTGGA
  W
  GTTACTCTAG AACCTGGAAG AAGCTGATGT TAGGATGGTG TAGTGAACAA GGTCAAGGTT
  GTGATGGACC CTCTTATGCT TGCTTACCGT CTCAGTTGGT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47924937	NES12039541	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30216997					SNP	A	T	A	T	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47924937	NES12039541	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86456715 () rs orientation: forward

Symbol	Name	Function Class
Gm48473	predicted gene, 48473	within coordinates
Gm48474	predicted gene, 48474	124 bp downstream
Gm48475	predicted gene, 48475	1405 bp downstream