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rs30217180 SNP Detail
Summary
  • ID
    rs30217180
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr6:48721958 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          ATAATAATGA AACCCAAACC TCTTAGGACC TTTTGTTCTC
    CCTCTTTGCC TTTGCCTTGA GATGTACATC TTTAAAAAAA AAACAAAAAA CAAACAAAAA
    M
    AAACAAACAA ACAAAACAAA ACAAAAACAA AAACAAAAAA CTGTTTTGAG TTGAAGAGTG
    GGAGGATCTT GTGCTCACAG CAGCCTCTCT TTGAATTGC                       
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
ss45907004 mCV25192960 ABI CRAMUS_MOUSE f SNP A A A C
ss133166443 ENSMUSSNP3541055 ENSEMBL ENSEMBL_Sanger f SNP A A C
ss321794602 CHEV_6_48695023 CHEVERUD SCREENING_POP f SNP A C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
rs30217180 SNP A A A C A C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:48721958 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi17377 CpG island 17377 1735 bp distal
Gimap1 GTPase, IMAP family member 1 1229 bp downstream
Gimap5 GTPase, IMAP family member 5 1173 bp upstream
Gm28053 predicted gene, 28053 within coordinates
Rr135565 regulatory region 135565 1643 bp proximal
Rr146256 regulatory region 146256 1357 bp distal
Rr146257 regulatory region 146257 642 bp proximal
Rr368069 regulatory region 368069 982 bp upstream
Rr399641 regulatory region 399641 1471 bp upstream
Tssr56207 transcription start site region 56207 1145 bp upstream
Tssr56208 transcription start site region 56208 1164 bp upstream
Tssr56209 transcription start site region 56209 1199 bp upstream
Tssr56210 transcription start site region 56210 1213 bp upstream
Tssr56211 transcription start site region 56211 1683 bp upstream
Tssr60779 transcription start site region 60779 1070 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory