rs30217180 SNP Detail

Summary

• ID
  rs30217180
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48721958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAATAATGA AACCCAAACC TCTTAGGACC TTTTGTTCTC
  CCTCTTTGCC TTTGCCTTGA GATGTACATC TTTAAAAAAA AAACAAAAAA CAAACAAAAA
  M
  AAACAAACAA ACAAAACAAA ACAAAAACAA AAACAAAAAA CTGTTTTGAG TTGAAGAGTG
  GGAGGATCTT GTGCTCACAG CAGCCTCTCT TTGAATTGC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45907004	mCV25192960	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C
ss133166443	ENSMUSSNP3541055	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		C
ss321794602	CHEV_6_48695023	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30217180					SNP	A	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48721958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17377	CpG island 17377	1735 bp distal
Gimap1	GTPase, IMAP family member 1	1229 bp downstream
Gimap5	GTPase, IMAP family member 5	1173 bp upstream
Gm28053	predicted gene, 28053	within coordinates
Rr135565	regulatory region 135565	1643 bp proximal
Rr146256	regulatory region 146256	1357 bp distal
Rr146257	regulatory region 146257	642 bp proximal
Rr368069	regulatory region 368069	982 bp upstream
Rr399641	regulatory region 399641	1471 bp upstream
Tssr56207	transcription start site region 56207	1145 bp upstream
Tssr56208	transcription start site region 56208	1164 bp upstream
Tssr56209	transcription start site region 56209	1199 bp upstream
Tssr56210	transcription start site region 56210	1213 bp upstream
Tssr56211	transcription start site region 56211	1683 bp upstream
Tssr60779	transcription start site region 60779	1070 bp downstream