ATAATAATGA AACCCAAACC TCTTAGGACC TTTTGTTCTC CCTCTTTGCC TTTGCCTTGA GATGTACATC TTTAAAAAAA AAACAAAAAA CAAACAAAAA M AAACAAACAA ACAAAACAAA ACAAAAACAA AAACAAAAAA CTGTTTTGAG TTGAAGAGTG GGAGGATCTT GTGCTCACAG CAGCCTCTCT TTGAATTGC M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|---|
ss45907004 | mCV25192960 | ABI | CRAMUS_MOUSE | f | SNP | A | A | A | C | ||
ss133166443 | ENSMUSSNP3541055 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | A | C | |||
ss321794602 | CHEV_6_48695023 | CHEVERUD | SCREENING_POP | f | SNP | A | C | ||||
SNP Consensus Information | |||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
||||
rs30217180 | SNP | A | A | A | C | A | C |
Location: Chr6:48721958 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi17377 | CpG island 17377 | 1735 bp distal | ||||||
Gimap1 | GTPase, IMAP family member 1 | 1229 bp downstream | ||||||
Gimap5 | GTPase, IMAP family member 5 | 1173 bp upstream | ||||||
Gm28053 | predicted gene, 28053 | within coordinates | ||||||
Rr135565 | regulatory region 135565 | 1643 bp proximal | ||||||
Rr146256 | regulatory region 146256 | 1357 bp distal | ||||||
Rr146257 | regulatory region 146257 | 642 bp proximal | ||||||
Rr368069 | regulatory region 368069 | 982 bp upstream | ||||||
Rr399641 | regulatory region 399641 | 1471 bp upstream | ||||||
Tssr56207 | transcription start site region 56207 | 1145 bp upstream | ||||||
Tssr56208 | transcription start site region 56208 | 1164 bp upstream | ||||||
Tssr56209 | transcription start site region 56209 | 1199 bp upstream | ||||||
Tssr56210 | transcription start site region 56210 | 1213 bp upstream | ||||||
Tssr56211 | transcription start site region 56211 | 1683 bp upstream | ||||||
Tssr60779 | transcription start site region 60779 | 1070 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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