rs30217389 SNP Detail

Summary

• ID
  rs30217389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86438373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATGCCAA CCAGATATTG
  GAATACCTGA AAAAGAATAT ATATGGCAAA ATAATAGGGC CATATTTGAT TATAAAAGAA
  CAGATACACA ATGCACTTGA GCATGGATCT ACGATTTCAA CTAAGCCTGT GGTTTCATTC
  CCTATGCCAC CTCCATCACC AACATATCCC TTTAACTCTG CTCTTCCACG AAAGAGAAAG
  R
  TCACTGATCC CATCTTTGGC TTCCTCCACA TCTGGCTCTC AGGAGAGCAT GGACTGTTGT
  CGTGATACTA TCAGGACACA AGTGACAAGA AATGCTTCCT TTCCTGCCAT TGCTTTACAT
  TGTTCCAAGA AGGAGGGCCC AGATAGTACT GCCTGAGCAG TCCAGACCAG AAATGTGGTG
  CTGCCCCATG TGTCTGCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47924769	NES12039643	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs30217389					SNP	A	A	G	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47924769	NES12039643	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86438373 () rs orientation: forward

Symbol	Name	Function Class
Gm48461	predicted gene, 48461	1067 bp downstream
Gm48463	predicted gene, 48463	764 bp downstream
Gm48464	predicted gene, 48464	within coordinates
Gm48465	predicted gene, 48465	499 bp upstream
Gm48466	predicted gene, 48466	1783 bp upstream