rs30217391 SNP Detail

Summary

• ID
  rs30217391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86438601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCTGGCT CTCAGGAGAG
  CATGGACTGT TGTCGTGATA CTATCAGGAC ACAAGTGACA AGAAATGCTT CCTTTCCTGC
  CATTGCTTTA CATTGTTCCA AGAAGGAGGG CCCAGATAGT ACTGCCTGAG CAGTCCAGAC
  CAGAAATGTG GTGCTGCCCC ATGTGTCTGC AGCAGCATTT TGGAAGAGGC ACTGTCCCTG
  Y
  CACCTGAGCA AGACATGGGC AAGAAAACCT TTCACTCCAT CAGAGGCAAG AAAACTTATC
  ACTCCCTCAG AGAAGATTGT GTGCTTCAAG AGAGTGAGCA TGAGTATCAG GGTGGCTTCT
  CAAGACTCTG TTGCTTCTAG CGATCTCTAA AGGCAAAAAT CCACTATATA TAATCAATGA
  TATTGGGTCC TTGCAAAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47924771	NES12039644	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30217391					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47924771	NES12039644	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86438601 () rs orientation: forward

Symbol	Name	Function Class
Gm48461	predicted gene, 48461	1295 bp downstream
Gm48463	predicted gene, 48463	992 bp downstream
Gm48464	predicted gene, 48464	within coordinates
Gm48465	predicted gene, 48465	271 bp upstream
Gm48466	predicted gene, 48466	1555 bp upstream
Rr436497	regulatory region 436497	1670 bp distal