rs30217393 SNP Detail

Summary

• ID
  rs30217393
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86438713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATAGTAC TGCCTGAGCA
  GTCCAGACCA GAAATGTGGT GCTGCCCCAT GTGTCTGCAG CAGCATTTTG GAAGAGGCAC
  TGTCCCTGCC ACCTGAGCAA GACATGGGCA AGAAAACCTT TCACTCCATC AGAGGCAAGA
  AAACTTATCA CTCCCTCAGA GAAGATTGTG TGCTTCAAGA GAGTGAGCAT GAGTATCAGG
  S
  TGGCTTCTCA AGACTCTGTT GCTTCTAGCG ATCTCTAAAG GCAAAAATCC ACTATATATA
  ATCAATGATA TTGGGTCCTT GCAAAGATGC AGGATGCAGA ACCCAGCAAA AGAGTAAACA
  AGCATGGGAG GGTGCATCAC AGCCTTGACC TTGTTCACTA CACCATGCTA ACCTCAGCAG
  CCACTTCCGG GTTCTAGAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47924773	NES12039645	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30217393					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47924773	NES12039645	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86438713 () rs orientation: forward

Symbol	Name	Function Class
Gm48461	predicted gene, 48461	1407 bp downstream
Gm48463	predicted gene, 48463	1104 bp downstream
Gm48464	predicted gene, 48464	within coordinates
Gm48465	predicted gene, 48465	159 bp upstream
Gm48466	predicted gene, 48466	1443 bp upstream
Rr436497	regulatory region 436497	1782 bp distal