rs30217646 SNP Detail

Summary

• ID
  rs30217646
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90404524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGC CTTAGCTGAA GCAGATTCTC
  R
  CCTGGAGAGT GACACAGTAC TTGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45905139	mCV23436793	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss133377556	ENSMUSSNP4936481	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
ss321852242	CHEV_6_90377536	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30217646					SNP	A	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90404524 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cfap100	cilia and flagella associated protein 100			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Splice-Site
Cpgi17720	CpG island 17720			836 bp proximal
Gm53295	predicted gene, 53295			within coordinates
Gm67990	predicted gene, 67990			965 bp upstream
Rr634196	regulatory region 634196			486 bp proximal
Rr634197	regulatory region 634197			843 bp proximal
Rr634198	regulatory region 634198			1018 bp proximal
Rr634199	regulatory region 634199			1245 bp proximal
Rr634200	regulatory region 634200			1337 bp proximal
Tssr57646	transcription start site region 57646			978 bp upstream
Tssr62021	transcription start site region 62021			859 bp downstream