rs30217919 SNP Detail

Summary

• ID
  rs30217919
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:86539738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGCAGA CCTTCTTGTT
  AAAAGAGCAC TCACATACCA GCTCACTCTC ATCACAGAAT GGGCTGTGCT TAATGCTCGG
  CTGGAAATAG TTCCTAAAAT TCCCAGAAAA ATACATCTGG CTTCCCTCTA CTGAAAAGCA
  AGTCATGACT TGTGTACGCT TGCACAGTGA ACACTTTAGT ACCGTCACTA ATTCCTAGAA
  K
  GCCAAAATTG AAAATATACC TCACCGATTG AAAAGCCCTT TTCTTAAAAG TTAAAGGCAT
  AAAAGTTCTA TTTTTCATAG TACTAACTTC ACACAGACAA AACCAATCAA GTGTCCTGTC
  AGGTCTTAGA AAGTTGGAAG CACAAGCTGA GTGGGCTACA TCACCACTGG TTTTCTGGTT
  TTAGATGCTG AGGCTTATCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47925249	NES12039058	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30217919					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47925249	NES12039058	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86539738 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2068	CpG island 2068	882 bp proximal
Gm54730	predicted gene, 54730	1442 bp downstream
Hsp90b1	heat shock protein 90, beta (Grp94), member 1	Intron
Rr436506	regulatory region 436506	1222 bp distal
Rr436507	regulatory region 436507	1404 bp proximal
Rr436508	regulatory region 436508	1625 bp proximal
Rr436509	regulatory region 436509	1981 bp proximal
Tssr95003	transcription start site region 95003	1888 bp downstream
Tssr95004	transcription start site region 95004	300 bp downstream
Tssr95005	transcription start site region 95005	407 bp upstream
Tssr95006	transcription start site region 95006	1982 bp upstream
Tssr98783	transcription start site region 98783	1901 bp upstream
Tssr98784	transcription start site region 98784	1879 bp upstream
Tssr98785	transcription start site region 98785	1633 bp upstream
Tssr98786	transcription start site region 98786	850 bp upstream
Tssr98787	transcription start site region 98787	267 bp upstream
Tssr98788	transcription start site region 98788	453 bp downstream
Tssr98789	transcription start site region 98789	1513 bp downstream
Tssr98790	transcription start site region 98790	1579 bp downstream
Tssr98791	transcription start site region 98791	1611 bp downstream
Ttc41	tetratricopeptide repeat domain 41	1937 bp upstream