rs30217921 SNP Detail

Summary

• ID
  rs30217921
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86539860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAA ACCAATCAAG TGTCCTGTCA
  R
  GTCTTAGAAA GTTGGAAGCA CAAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47925251	NES12039059	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30217921					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47925251	NES12039059	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86539860 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2068	CpG island 2068	760 bp proximal
Gm54730	predicted gene, 54730	1320 bp downstream
Hsp90b1	heat shock protein 90, beta (Grp94), member 1	within coordinates
Rr436506	regulatory region 436506	1344 bp distal
Rr436507	regulatory region 436507	1282 bp proximal
Rr436508	regulatory region 436508	1503 bp proximal
Rr436509	regulatory region 436509	1859 bp proximal
Tssr95004	transcription start site region 95004	422 bp downstream
Tssr95005	transcription start site region 95005	285 bp upstream
Tssr95006	transcription start site region 95006	1860 bp upstream
Tssr95007	transcription start site region 95007	1887 bp upstream
Tssr98785	transcription start site region 98785	1755 bp upstream
Tssr98786	transcription start site region 98786	972 bp upstream
Tssr98787	transcription start site region 98787	389 bp upstream
Tssr98788	transcription start site region 98788	331 bp downstream
Tssr98789	transcription start site region 98789	1391 bp downstream
Tssr98790	transcription start site region 98790	1457 bp downstream
Tssr98791	transcription start site region 98791	1489 bp downstream
Ttc41	tetratricopeptide repeat domain 41	1815 bp upstream