rs30217923 SNP Detail

Summary

• ID
  rs30217923
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:86539967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAAGCCC TTTTCTTAAA
  AGTTAAAGGC ATAAAAGTTC TATTTTTCAT AGTACTAACT TCACACAGAC AAAACCAATC
  AAGTGTCCTG TCAGGTCTTA GAAAGTTGGA AGCACAAGCT GAGTGGGCTA CATCACCACT
  GGTTTTCTGG TTTTAGATGC TGAGGCTTAT CCCTAGCACT TTCCTTCCTG AATCAGCAGT
  Y
  ACTCCCAGGA GCAGACTGCT AGGAGCTTTT GCCTGCAGAT AAATGGGCAC TCCTAAGATC
  TTCTCTGGTT ATTTTGTATC ATTAGCAACA TTTTGGGCAC TGGACCTTGT AATCTGAATG
  GAGAAACACC AACAGCCACT CTGCCCCACT AACTTGCAGA GCTTATCAAC ATAGCTTCAA
  ATGCACCGAC CTCTGCACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ
ss47925253	NES12039060	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ
rs30217923					SNP	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47925253	NES12039060	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86539967 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2068	CpG island 2068	653 bp proximal
Gm54730	predicted gene, 54730	1213 bp downstream
Hsp90b1	heat shock protein 90, beta (Grp94), member 1	Intron
Rr436506	regulatory region 436506	1451 bp distal
Rr436507	regulatory region 436507	1175 bp proximal
Rr436508	regulatory region 436508	1396 bp proximal
Rr436509	regulatory region 436509	1752 bp proximal
Tssr95004	transcription start site region 95004	529 bp downstream
Tssr95005	transcription start site region 95005	178 bp upstream
Tssr95006	transcription start site region 95006	1753 bp upstream
Tssr95007	transcription start site region 95007	1780 bp upstream
Tssr98785	transcription start site region 98785	1862 bp upstream
Tssr98786	transcription start site region 98786	1079 bp upstream
Tssr98787	transcription start site region 98787	496 bp upstream
Tssr98788	transcription start site region 98788	224 bp downstream
Tssr98789	transcription start site region 98789	1284 bp downstream
Tssr98790	transcription start site region 98790	1350 bp downstream
Tssr98791	transcription start site region 98791	1382 bp downstream
Ttc41	tetratricopeptide repeat domain 41	1708 bp upstream