rs30218399 SNP Detail

Summary

• ID
  rs30218399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128176682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAATGAAAT CTTTTAATAA GCTCTCCTGG CCGATGGCTA
  GTCACCTTGT TTGGCTGTAC ATCCTCTAAG GATTAAGTAG TCCTGTTGTG GTACTGAAGG
  R
  AATGGAGGAT GAAATGAAAT TGATGAATGA AAAAATAATA TATAGTAAAA TGTTAGTAGG
  ATTTATGAAG GAGCCTAAAA TTATAACCAT AGGAGGCAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45907290	mCV24158470	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G		A
ss51863570	NES14892187	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		G	A	G	G		G	G	G	G		G
ss133637986	ENSMUSSNP5585987	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
ss321944115	CHEV_6_128149737	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30218399					SNP	G	G	A	A	A	G	A	G	G	A	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51863570	NES14892187	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128176682 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18048	CpG island 18048	316 bp proximal
Gm10010	predicted gene 10010	within coordinates
Gm66766	predicted gene, 66766	585 bp upstream
Rr399953	regulatory region 399953	788 bp upstream
Rr639207	regulatory region 639207	202 bp proximal
Rr639208	regulatory region 639208	596 bp proximal
Rr639209	regulatory region 639209	853 bp proximal
Rr639210	regulatory region 639210	1000 bp proximal
Rr639211	regulatory region 639211	1777 bp proximal
Tssr63410	transcription start site region 63410	833 bp downstream
Tssr63411	transcription start site region 63411	855 bp downstream
Tssr63412	transcription start site region 63412	857 bp downstream
Tssr63413	transcription start site region 63413	879 bp downstream
Tssr63414	transcription start site region 63414	919 bp downstream