rs30218627 SNP Detail

Summary

• ID
  rs30218627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60745122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGT AACTCCGATC CCTGGAGACC
  Y
  AGCACTCTCT TCTGGCCTTC ATGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39658115	mCV24046420	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss147248075	ENSMUSSNP2425614	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss325640180	CHEV_18_60771704	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30218627					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60745122 () rs orientation: forward

Symbol	Name	Function Class
Rr538593	regulatory region 538593	1956 bp distal
Rr538594	regulatory region 538594	1709 bp distal
Rr538595	regulatory region 538595	1191 bp proximal
Synpo	synaptopodin	within coordinates
Tssr153456	transcription start site region 153456	1982 bp upstream
Tssr153457	transcription start site region 153457	1938 bp upstream
Tssr153458	transcription start site region 153458	1371 bp downstream
Tssr153459	transcription start site region 153459	1451 bp downstream
Tssr153460	transcription start site region 153460	1480 bp downstream