rs30218646 SNP Detail

Summary

• ID
  rs30218646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86540569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGAGATGG AAGAATTATG
  TACTGACGTC AATAACCAAT GTCAAGGTAA GTTTGCACGC TAAAGTTTAA ATATGAATGC
  TCAAGACCCC CGTTGACTCT GGAAGGCCAG GCAGCCATCA CGTGTGTCTA TCCTAGGCAG
  TGAGAGAGGC CCCCGTCTAC ACCCACACGT GTTGCGCACA GCTGAGAGGA GGTCTCTACA
  Y
  TGGCCAAGCC AAAACTTGGG CCTCACTTAG TTATCACAGG TCAGAATGCA AACAGGGTTT
  GTGCAACTTC TGTTGAGGGG AACTGAAATC CGGCCCAAAG GGGAAGACAT GTCAAGGACA
  GCTCTTGAAG CACATCGGAA TCAGATATTG GGCCACCGCC ACGACGCTGG CCCGAGGGCC
  CACGCTCGCG AGTCGGGCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47925257	NES12039062	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30218646					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47925257	NES12039062	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86540569 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2068	CpG island 2068	51 bp proximal
Gm54730	predicted gene, 54730	611 bp downstream
Hsp90b1	heat shock protein 90, beta (Grp94), member 1	within coordinates
Rr436507	regulatory region 436507	573 bp proximal
Rr436508	regulatory region 436508	794 bp proximal
Rr436509	regulatory region 436509	1150 bp proximal
Tssr95004	transcription start site region 95004	1131 bp downstream
Tssr95005	transcription start site region 95005	405 bp downstream
Tssr95006	transcription start site region 95006	1151 bp upstream
Tssr95007	transcription start site region 95007	1178 bp upstream
Tssr98786	transcription start site region 98786	1681 bp upstream
Tssr98787	transcription start site region 98787	1098 bp upstream
Tssr98788	transcription start site region 98788	352 bp upstream
Tssr98789	transcription start site region 98789	682 bp downstream
Tssr98790	transcription start site region 98790	748 bp downstream
Tssr98791	transcription start site region 98791	780 bp downstream
Ttc41	tetratricopeptide repeat domain 41	1106 bp upstream