rs30218648 SNP Detail

Summary

• ID
  rs30218648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86541536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAGGTCGG GCCGCTTTTC
  ACCCCACTGC TTGCGGGCGG GGGACGGGAA ACACGAACTC ACCAATCGTG CCTCACCACG
  CACTCTCTGC ACCCAATGGA GACGCATGGG GGGGGACCGC AGCCCGCCAA TCGGAACTGT
  CCAGGTGCGG TGCCCGATGC CCGAAGCGTG GCTCCTTGCG ATTGGGCTTG TCCAGCGGCT
  Y
  TCCTCCAATC AGATGGCTCC GCGGGCCCTC ACACACCGGG CCACCCTTTG GCCTGGGAAG
  CCTTGGTCCC TGAGGAAAAC CGTCCAATGA ACGTAGGCGC ATAGCACGTC TGTCCATTCC
  TAGAGGTCCC GGGGAACCAC TTCCGGCTTC TAGCGAACGT TTAGTCCGTG ACTAGGGGAA
  ACGGTAGCCA AGACAATGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47925259	NES12039063	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30218648					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47925259	NES12039063	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86541536 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2068	CpG island 2068	within coordinates
Gm54730	predicted gene, 54730	224 bp upstream
Hsp90b1	heat shock protein 90, beta (Grp94), member 1	228 bp upstream
Rr436507	regulatory region 436507	373 bp distal
Rr436508	regulatory region 436508	within coordinates
Rr436509	regulatory region 436509	183 bp proximal
Tssr95005	transcription start site region 95005	1372 bp downstream
Tssr95006	transcription start site region 95006	184 bp upstream
Tssr95007	transcription start site region 95007	211 bp upstream
Tssr98788	transcription start site region 98788	1319 bp upstream
Tssr98789	transcription start site region 98789	274 bp upstream
Tssr98790	transcription start site region 98790	201 bp upstream
Tssr98791	transcription start site region 98791	180 bp upstream
Ttc41	tetratricopeptide repeat domain 41	139 bp upstream