rs3021894 SNP Detail

Summary

• ID
  rs3021894
• Variation Type
  SNP
• Alleles
  A/C/G/T

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:74595669 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TACTT AAACTGGTAT GTGTTCTCCC
  N
  TGACAGCTTT CAGTTAATAG AATAA                                      
  
  N = A/C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/J	BALB/cJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss4319622	U95119_393H_2	ROCHEBIO	RPAMM	f	SNP	C		T	C	T	C
ss38696038	mCV23961983	ABI	CRAMUS_MOUSE	r	SNP		C	T			C
ss132435317	ENSMUSSNP3345931	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	T			C
ss323749415	CHEV_11_74518345	CHEVERUD	SCREENING_POP	r	SNP							T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/J	BALB/cJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3021894					SNP	C	G	A	C	T	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74595669 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1			Intron
				Noncoding-Transcript-Variant
Rr386282	regulatory region 386282			1145 bp upstream
Tssr109134	transcription start site region 109134			774 bp downstream