rs3021896 SNP Detail

Summary

• ID
  rs3021896
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:73976791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTA CATGTATGTA CTAAGGGAGT
  M
  CTCGTCCATT GAGCTACATT CCCAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss4319673	Y09085_414E_4	ROCHEBIO	RPAMM	f	SNP		C	A	A	A
ss38960333	mCV24196961	ABI	CRAMUS_MOUSE	f	SNP	A	A		C
ss137890998	ENSMUSSNP3337848	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss324099303	CHEV_12_75031004	CHEVERUD	SCREENING_POP	f	SNP						C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3021896					SNP	A	A	A	?	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73976791 () rs orientation: forward

Symbol	Name	Function Class
Hif1a	hypoxia inducible factor 1, alpha subunit	within coordinates
Rr467875	regulatory region 467875	1431 bp proximal
Tssr113853	transcription start site region 113853	1806 bp downstream
Tssr113854	transcription start site region 113854	682 bp upstream
Tssr113855	transcription start site region 113855	1543 bp upstream