rs30219336 SNP Detail

Summary

• ID
  rs30219336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:135287115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGC CATTCCCTGT ACACGGGTTT
  Y
  TTCCTACTGG GAGCATCCGG GTCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss45905950	mCV24021875	ABI	CRAMUS_MOUSE	f	SNP	T	T				C		T
ss51444379	NES14008583	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T		C			T	T
ss133802859	ENSMUSSNP434245	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T						T
ss321986323	CHEV_6_135260135	CHEVERUD	SCREENING_POP	f	SNP									T			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30219336					SNP	T	T	T	T	T	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51444379	NES14008583	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:135287115 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18093	CpG island 18093	within coordinates
Gm36640	predicted gene, 36640	within coordinates
Gm44274	predicted gene, 44274	1339 bp downstream
Pbp2	phosphatidylethanolamine binding protein 2	within coordinates
Tssr63760	transcription start site region 63760	232 bp downstream
Tssr63761	transcription start site region 63761	257 bp downstream