rs30219564 SNP Detail

Summary

• ID
  rs30219564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:86542151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT AGTCTCACCG TGTCAGAGGG
  Y
  CAGCCCTGGA TTCTGGGCTG GTGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss47925265	NES12039066	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs30219564					SNP	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47925265	NES12039066	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86542151 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2068	CpG island 2068	within coordinates
Gm54730	predicted gene, 54730	839 bp upstream
Hsp90b1	heat shock protein 90, beta (Grp94), member 1	843 bp upstream
Rr436507	regulatory region 436507	988 bp distal
Rr436508	regulatory region 436508	433 bp distal
Rr436509	regulatory region 436509	within coordinates
Tssr95005	transcription start site region 95005	1987 bp downstream
Tssr95006	transcription start site region 95006	409 bp downstream
Tssr95007	transcription start site region 95007	395 bp downstream
Tssr98788	transcription start site region 98788	1934 bp upstream
Tssr98789	transcription start site region 98789	889 bp upstream
Tssr98790	transcription start site region 98790	816 bp upstream
Tssr98791	transcription start site region 98791	795 bp upstream
Ttc41	tetratricopeptide repeat domain 41	Intron