rs30219566 SNP Detail

Summary

• ID
  rs30219566
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86542184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATT CTGGGCTGGT GGTAGCACCC
  S
  GGTTTCCACG TCCGCTTTCT TGCGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47925267	NES12039067	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	C	G	C	G	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30219566					SNP	G	G	G	G	C	G	C	G	C	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47925267	NES12039067	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86542184 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2068	CpG island 2068	within coordinates
Gm54730	predicted gene, 54730	872 bp upstream
Hsp90b1	heat shock protein 90, beta (Grp94), member 1	876 bp upstream
Rr436507	regulatory region 436507	1021 bp distal
Rr436508	regulatory region 436508	466 bp distal
Rr436509	regulatory region 436509	within coordinates
Tssr95006	transcription start site region 95006	442 bp downstream
Tssr95007	transcription start site region 95007	428 bp downstream
Tssr98788	transcription start site region 98788	1967 bp upstream
Tssr98789	transcription start site region 98789	922 bp upstream
Tssr98790	transcription start site region 98790	849 bp upstream
Tssr98791	transcription start site region 98791	828 bp upstream
Ttc41	tetratricopeptide repeat domain 41	within coordinates