rs30219571 SNP Detail

Summary

• ID
  rs30219571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86542608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGCGCG GTGGTGAAGT
  CCAGGCTAGC ATAGAACAGG AAAGAACTTA TGCAGATACT TGAAAGCAAA AGCCGCAGAG
  CTTGCAAAAC AGCCTGGATT GTGGCTTTGT AACTTCATAG AAACACCTTT CCGCCTTCCG
  AAAGATAGCA AAAGAGGCTC TTTCTGGTGA GGGAAGTCCC TAAGGCCAGC TTGTACGTTC
  Y
  GAAATGTTTT CTAAGCTCTT TAGCCTCATT TTAACCAATT TTCCACCAGC ACGCTTGCCT
  GCCTCTAACA CATCCATTCC ATCACCGCTT TCTCCAAGAA AATTCGAGTT GTTTTTTTTT
  TTTAGGCAAT CCAGGTTCCC GAAGGCAAGC TTTTCAGTGA CAATGTCATA GTCCCTTTGA
  CAACTTCAAG AATTTAGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47925273	NES12039072	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30219571					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47925273	NES12039072	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86542608 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2068	CpG island 2068	268 bp distal
Gm54730	predicted gene, 54730	1296 bp upstream
Hsp90b1	heat shock protein 90, beta (Grp94), member 1	1300 bp upstream
Rr436507	regulatory region 436507	1445 bp distal
Rr436508	regulatory region 436508	890 bp distal
Rr436509	regulatory region 436509	within coordinates
Tssr95006	transcription start site region 95006	866 bp downstream
Tssr95007	transcription start site region 95007	852 bp downstream
Tssr98789	transcription start site region 98789	1346 bp upstream
Tssr98790	transcription start site region 98790	1273 bp upstream
Tssr98791	transcription start site region 98791	1252 bp upstream
Ttc41	tetratricopeptide repeat domain 41	within coordinates