rs30219573 SNP Detail

Summary

• ID
  rs30219573
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86544990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTGCACA CTTAAAGGGG
  GTGAACCTTC TAACATTTAA CACTTGAATC CCTTTTTGGG TTGTTTTTTC TTTTTACAAT
  GTTTTTCTTA GACAGTTTCA TGTGTGTGTA TGATGCATTT TGAGCTACAT AGCTCCCATT
  ACTACTGAAC CCAACAGATT GCCTTCTGTC ATGTCTTCAG AACGTATTTT GATGTGCATA
  K
  GAAACCTCAA ACTCAAGTAA CCCAACAGCA GCTGCTACTC TGAAACAAAA TATTAAAAAA
  CATTTCAGAA AGAATCGAGA GGCAGCCAGT TATGTCTACT ATTGTTAGTG TTGTTCCTCG
  CTCATTAGGA TGGCCCAGCA ATAGGACAAA GAAACAATGG GGACACATTT TAGCAAAATT
  GCTGGACCTA GTGATGCATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47925275	NES12039014	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30219573					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47925275	NES12039014	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86544990 () rs orientation: forward

Symbol	Name	Function Class
Rr436509	regulatory region 436509	1789 bp distal
Ttc41	tetratricopeptide repeat domain 41	within coordinates