rs30219917 SNP Detail

Summary

• ID
  rs30219917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86440353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTACACCAT CCTAATATCA
  GCAGCTGCTT CTAGCTTGTA GAGTAACATC AAATCAGGTC TATCTAGTTG TGTAGGTTGC
  ACAAGGAGGA AAAATGTTTG ACCCAATAAT AAAGGATGTC CTGCCACAGG AGGAAGATGT
  AAAGAAAATA TTCAGGCAGT TAGTAGCAGT TATAAAGTAC TGCCACACCC TTGCCATTGT
  Y
  GATCCTGACA TTAAAACCTT TTAATATACT CATAGATTGA TAGAGTGATG TCAGGTTGAT
  AGATCTGGCC CCTTACTGCC AGGGCAGTGT AGGACCAAGT GCTTTTTTTC ACCAGAGCTC
  ACTGTAGGGA AGCCATATGA TGGCAAGGGG GCAGATATCT GAAGTCTGGA CATGCGACTC
  TATGTTATCC CCATAAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47924797	NES12039659	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30219917					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47924797	NES12039659	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86440353 () rs orientation: forward

Symbol	Name	Function Class
Gm48464	predicted gene, 48464	1562 bp downstream
Gm48465	predicted gene, 48465	287 bp downstream
Gm48466	predicted gene, 48466	within coordinates