rs30221009 SNP Detail

Summary

• ID
  rs30221009
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136095474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTGTCTT AGGCTCCCAT
  TACAGACATA TGGATCTTAG ATTCATTTTT TTCTGGTGTA TTACAAGTGA CACAACTCAT
  ACACCGATTG CCACAGGAGT GGTATGCTCA ACTCTGGGAA ACATCTAGAA ATACAAGAGG
  TCATTCAGAA ATAGGTTGTC GAGAAAAAGA AGTGAACAGA AAAACATTCA GGGCTAGAGC
  Y
  GTCACCCAGT GGGGCAGGAC TTGTATGGCA CGTGATCAAC CATCAACATC ACAGACATTA
  ATGAAATTAT ACCCTGAACC CTGTTGCTGT GGGCACCCCT CTTTCATGGT CTTCTAGAAT
  TGTTATACAA AGGTCACCAA TGACTCTGGA TCACAAGGTC AGTCAGGGGG CCTTTCCACC
  CTCCTCCTCC ACCCATAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45907044	mCV24129162	ABI	CRAMUS_MOUSE	f	SNP	T	T	C						C
ss51446005	NES13995217	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	C	C	T	C	C	C	T
ss133829231	ENSMUSSNP1806423	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30221009					SNP	T	T	C	C	C	T	C	C	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51446005	NES13995217	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136095474 () rs orientation: forward

Symbol	Name	Function Class
Grin2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	within coordinates
Tssr2039	transcription start site region 2039	1811 bp upstream