rs30221169 SNP Detail

Summary

• ID
  rs30221169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:107973520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA TGTAGATGGC CACCACTCTC
  Y
  AGGGTACCAC ACTTGAGAGG AATTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46384900	mCV22696217	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss136951683	ENSMUSSNP6783528	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30221169					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107973520 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	1784 bp upstream
Bsn	bassoon	mRNA-UTR
Cpgi22322	CpG island 22322	1073 bp distal
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	1599 bp downstream
Rr686708	regulatory region 686708	1728 bp distal
Rr686709	regulatory region 686709	1104 bp distal
Rr686710	regulatory region 686710	544 bp distal
Rr686711	regulatory region 686711	20 bp distal
Rr686712	regulatory region 686712	181 bp proximal
Tssr87065	transcription start site region 87065	1625 bp downstream
Tssr87066	transcription start site region 87066	1108 bp downstream
Tssr87067	transcription start site region 87067	1070 bp downstream
Tssr91491	transcription start site region 91491	1834 bp upstream
Tssr91492	transcription start site region 91492	1779 bp upstream