rs30221186 SNP Detail

Summary

• ID
  rs30221186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7553288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAATAT GTAATAAAAT
  AAATAAATAA AAAATAAAAA TAAGATATAA AAAGAAAGAA ATTTATCAAC AATGTATGCC
  TGGATTGTGG TCTCTACTTA CCATGTACAA CTCAATGAAA ATGAAGGCTC CTTAGAGGAA
  GACTTGGAGT CTCAGGTAGG AAACAGATCA AAACCAAGGG AATCATCACT TCCTTTTAAT
  Y
  ACATATCAAA AGCCTTGGAA GAACTTTATG CTAGCCAAGA ATGGCATAAG TTCAGCATCA
  AGTAATGAGT ATCTATCTAC CTTGCATTGA AATGTATCAA CTCTGCTTAA ATCTGTGAGG
  TCTTTGTCTT AAAAAATAGG TCATACCTTA AAAGCTCTAA ATTGGCAATT TTTAAAGTTG
  GTAGATCATG GATTTATTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45907321	mCV22684841	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss132951803	ENSMUSSNP1614222	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss321734084	CHEV_6_7503288	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30221186					SNP	C	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7553288 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17147	CpG island 17147	1507 bp proximal
Rr146475	regulatory region 146475	1512 bp proximal
Tac1	tachykinin 1	1773 bp upstream
Tssr54885	transcription start site region 54885	1765 bp upstream