rs30221335 SNP Detail

Summary

• ID
  rs30221335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122579369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCACATA CATTTATACA
  TTCAAAAACA GACAAAACTT CCCTTACTTC TTCCTGATCT GATTTCAAGG GAGGAGCGCC
  TTGCTGTTGC TGCCTGCAGA ATCCAACGCT CATGGGCACC GTGGTTCTGT AGCGGGAGTA
  GGCACCGGCT TCCTGACCAC AGAAAGCTTA AGAGCTGCTG GTTTCGCTTT TAGAGAAACT
  Y
  GAACAGCTAG ATCAGGCGGC AGGGGTTTGC ATCAGGCGAG CAGGAGGCGG GGCTTTACCA
  GCAGTGCAGG ACTCTCAGCT GCAGGCACAG TGCCAGTTTA TCAGTTTTTG TTGTTATTAT
  TATTGTTGTT GTTGTCCCGA TTCGGCCGCT TCCCCCCACA CCCCCCCCCG AAAATCCTTG
  AGATGGGTAA ATACTAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45905181	mCV22300200	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	C
ss133609443	ENSMUSSNP5116890	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
ss321934192	CHEV_6_122552428	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30221335					SNP	T	T	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122579369 () rs orientation: forward

Symbol	Name	Function Class
Apobec1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	within coordinates
Rr399899	regulatory region 399899	within coordinates
Rr399900	regulatory region 399900	1700 bp upstream
Rr638222	regulatory region 638222	50 bp distal
Rr638223	regulatory region 638223	within coordinates
Tssr58686	transcription start site region 58686	261 bp upstream
Tssr62921	transcription start site region 62921	1856 bp upstream
Tssr62922	transcription start site region 62922	1560 bp upstream
Tssr62923	transcription start site region 62923	66 bp upstream
Tssr62924	transcription start site region 62924	10 bp upstream
Tssr62925	transcription start site region 62925	within coordinates
Tssr62926	transcription start site region 62926	673 bp downstream
Tssr62927	transcription start site region 62927	1966 bp downstream