rs30222189 SNP Detail

Summary

• ID
  rs30222189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:113621849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTG TTCCGTGTGG CCCTACTGTC
  Y
  GTGCACAGAG CTGCCTTTGA TGGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46384410	mCV23322788	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss136989714	ENSMUSSNP5974017	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss323201093	CHEV_9_113701899	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30222189					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:113621849 () rs orientation: forward

Symbol	Name	Function Class
Clasp2	CLIP associating protein 2	within coordinates
Tssr3045	transcription start site region 3045	513 bp upstream
Tssr87530	transcription start site region 87530	29 bp downstream
Tssr87531	transcription start site region 87531	50 bp upstream
Tssr87532	transcription start site region 87532	200 bp upstream
Tssr87533	transcription start site region 87533	247 bp upstream
Tssr87534	transcription start site region 87534	535 bp upstream
Tssr87535	transcription start site region 87535	566 bp upstream