rs30222699 SNP Detail

Summary

• ID
  rs30222699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:5349873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTGCAG TGCTCTGGAA
  AACTGGCCAC ATCTCTCACA CACTGCAGCA CTTGGGAGAG TAGACCATGC CACTCACCTG
  CACAGCACAC CAAAGCTGAC CCTAGTGGTA GGGACTTAGG TGAGCTGGCC TGGGAGAGCT
  GGCCCTGTCA CTCATCTGCC TGTCCACTGT GAGGGTGTAG GAGTGATGCC CTCTCTGCTA
  Y
  CTCACCCCTT GCCAGCTGTT ACAGTTGAGA GATGAAGTTG AAACTTAAGG AAAGTTTTGG
  AAAGTTGTTT GGATGGTGTT TTGCTGGGAC AAACATGTGA AGGAATGTTT AGCTGAAGCA
  CACACAGGTG AAAGTTTAAG GCAGACTCAA GAAGGAACAT TTAGCTGAAG CTGACAGAGG
  AGAAAGGATG TTCTGCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39661147	mCV25013676	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss146577983	ENSMUSSNP3371109	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss325518185	CHEV_18_5349871	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30222699					SNP	C	C	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:5349873 () rs orientation: forward

Symbol	Name	Function Class
Gm50064	predicted gene, 50064	within coordinates
Gm52372	predicted gene, 52372	724 bp downstream
Gm58537	predicted gene, 58537	within coordinates
Rr533383	regulatory region 533383	762 bp distal