rs30223048 SNP Detail

Summary

• ID
  rs30223048
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45235876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGAGTCT TTAGGCCCTG
  TTCAGCTATA TGGGACTTTT GAAAAGGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGATGCATG
  CATGTGAGTG CACAGGTATA TGAATGTATG CAGATCAGAG CAGCAGGTCC GTGTCTTCCT
  W
  TATTGCTGTT CTCCTTATTT TATTACTTTA AGACAAGCTC TCTCCTTGAA CCAGAAGCTC
  ACTGGTTCTG TTAGTCTGTG GCTGATCAGA GTCGCAGCAC CCTTATCACT AGAAGGACAG
  CCACACACAG CCAAGTCCAG CTTTCTGCCC TCCTGGTCTC CCATGATGCA CCATAACCTC
  TAGAAAGTCC AACAAGCTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss46384721	mCV24048440	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T
ss136409300	ENSMUSSNP1108659	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs30223048					SNP	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45235876 () rs orientation: forward

Symbol	Name	Function Class
Rr203899	regulatory region 203899	120 bp proximal
Rr203900	regulatory region 203900	1017 bp proximal
Rr203901	regulatory region 203901	1845 bp proximal
Tmprss13	transmembrane protease, serine 13	within coordinates