rs30223466 SNP Detail

Summary

• ID
  rs30223466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:37849719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCA CCACAACATA AGGAAGTGTG
  Y
  ATTGAAAGGT GGCAGCACTA TGATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45907440	mCV25059576	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss321786255	CHEV_6_37822784	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30223466					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:37849719 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17305	CpG island 17305	1009 bp distal
Rr368051	regulatory region 368051	1091 bp downstream
Rr399615	regulatory region 399615	1929 bp downstream
Rr628726	regulatory region 628726	1963 bp distal
Rr628728	regulatory region 628728	1281 bp distal
Trim24	tripartite motif-containing 24	within coordinates
Tssr55625	transcription start site region 55625	1902 bp downstream
Tssr55626	transcription start site region 55626	1857 bp downstream
Tssr55627	transcription start site region 55627	1828 bp downstream
Tssr55628	transcription start site region 55628	1811 bp downstream
Tssr55629	transcription start site region 55629	1769 bp downstream
Tssr60361	transcription start site region 60361	1440 bp upstream
Tssr60362	transcription start site region 60362	1294 bp upstream