rs30224361 SNP Detail

Summary

• ID
  rs30224361
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71522846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCC CTTAACTTTT TCCGGTGTGT
  Y
  ATTTTATGTG AAATGGAAGT TGGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45908345	mCV25419823	ABI	CRAMUS_MOUSE	f	SNP	T	T	T				T		C
ss47971124	NES11901780	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C		C	C	T	C		C		C	T	C		C
ss133276485	ENSMUSSNP3726218	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C					C
ss321818033	CHEV_6_71495856	CHEVERUD	SCREENING_POP	f	SNP												C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30224361					SNP	T	T	T	C	T	C	T	C	C	T	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47971124	NES11901780	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71522846 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700040L08Rik	RIKEN cDNA 1700040L08 gene			1748 bp upstream
Chmp3	charged multivesicular body protein 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi17526	CpG island 17526			1243 bp distal
Rr399696	regulatory region 399696			1894 bp downstream
Rr631970	regulatory region 631970			1935 bp distal
Rr631971	regulatory region 631971			1258 bp distal
Tssr57031	transcription start site region 57031			1994 bp downstream
Tssr57032	transcription start site region 57032			1964 bp downstream
Tssr57033	transcription start site region 57033			1905 bp downstream
Tssr57034	transcription start site region 57034			1876 bp downstream
Tssr57035	transcription start site region 57035			1495 bp downstream
Tssr57036	transcription start site region 57036			622 bp downstream