rs30225773 SNP Detail

Summary

• ID
  rs30225773
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86579707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAAAGTGAG TTCCAGGACA ACCAGGGCTA CACAGAGAAA
  TCCTGTCTCG AAAAACAAAA AAAAAACAAA ACAAAACAAA ACAAAAAAAA GGGGGGGGGG
  R
  GGTGCTAAAG AGTTCAGCAG TTAAAAACAC TTGATGCTCT GCTGCAGAGG ACCCAAGTCC
  AGGTCCCAAG GCCCAAGCGG TATGGCTTAC AAATACCTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J
ss46385794	mCV23664599	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J
rs30225773					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86579707 () rs orientation: forward

Symbol	Name	Function Class
A330041J22Rik	RIKEN cDNA A330041J22 gene	within coordinates
Cpgi22104	CpG island 22104	1285 bp distal
Gm55057	predicted gene, 55057	1389 bp downstream
Me1	malic enzyme 1, NADP(+)-dependent, cytosolic	1740 bp upstream
Rr205233	regulatory region 205233	514 bp distal
Rr206830	regulatory region 206830	1106 bp distal
Rr211051	regulatory region 211051	895 bp proximal
Tssr90786	transcription start site region 90786	1998 bp upstream
Tssr90787	transcription start site region 90787	1976 bp upstream
Tssr90788	transcription start site region 90788	1865 bp upstream
Tssr90789	transcription start site region 90789	1800 bp upstream
Tssr90790	transcription start site region 90790	1696 bp upstream