rs30226503 SNP Detail

Summary

• ID
  rs30226503
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50406435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCCCCAG GCAGATCACA
  CCCTGGCAAC ATAAGGCTGT GTTAAGCGGA CATTGTTTAT TTTTGAGGGA ATTCTTGCAG
  TCTACTGTCC TTTTACAGCC ACTTGACAGA ATGACTGTAC CCTGCGGGAC GCCAGGAAGG
  ATAACTTGAG CTTAGTGTAT GGGAAAAGCC AAGTTAAACT AGAGGAAGAT ATCAGTAGCC
  Y
  GCCTTGTATG TGAGGGGCCT GAAAGGCAGA GGTGTTGCCT GACTTGATGG AGACCCCTTG
  CCAGCAAGGA GTAGAAGATC TTTGAGTCCT GGTTGTTCAA TCTTAATCTA ATGGTTTTTT
  TCTTAGAAGT ATCTGGAAAG TATTTCATAA CTTTCCCTTA TGGGATTCAA CAAACCTACA
  AGTTAAAAAC ACGCTTTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46384868	mCV24342309	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss47706258	NES11306375	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		T	C	C	C	T	C	C	C	C
ss136476430	ENSMUSSNP248343	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30226503					SNP	T	T	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47706258	NES11306375	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50406435 () rs orientation: forward

Symbol	Name	Function Class
Plet1	placenta expressed transcript 1	within coordinates
Plet1os	placenta expressed transcript 1, opposite strand	within coordinates
Rr678654	regulatory region 678654	598 bp distal
Rr678655	regulatory region 678655	702 bp proximal
Rr678656	regulatory region 678656	1427 bp proximal
Tssr2866	transcription start site region 2866	1078 bp downstream
Tssr85023	transcription start site region 85023	989 bp downstream
Tssr85024	transcription start site region 85024	863 bp downstream
Tssr85025	transcription start site region 85025	602 bp downstream
Tssr85026	transcription start site region 85026	1641 bp upstream