rs30226568 SNP Detail

Summary

• ID
  rs30226568
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:135709063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAAAAGAAG AAGAAAAAGC GAATGGGAGC CAAGTTCACC
  CCCGACTCTT TCCGTGACAT GCGCACCACG CGGCCCACAG CCCTATCCCT CCCGCACCCA
  Y
  CTTAATCTCT CTCTCTCTCT CTCTTCCCTC ACTCAGACAT CAGACTCAAT ACTAGAAAGT
  TTCTCATAAA CATGTCCATT GCTGGAGCCA TTGAAAGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45908254	mCV23370838	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss133816889	ENSMUSSNP1819978	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs30226568					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:135709063 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18096	CpG island 18096	293 bp proximal
Gm14329	predicted gene 14329	805 bp upstream
Grin2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	within coordinates
Tssr63774	transcription start site region 63774	798 bp upstream
Tssr63775	transcription start site region 63775	697 bp downstream
Tssr63776	transcription start site region 63776	1522 bp downstream
Tssr63777	transcription start site region 63777	1542 bp downstream
Tssr63778	transcription start site region 63778	1600 bp downstream